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Abundance of sulfur-degrading bacteria in a benthic bacterial community of shallow sea sediment in the off-Terengganu coast of the South China Sea

Marziah, Z. and Mahdzir, A. and Musa, M. N. and Jaafar, A. B. and Azhim, A. and Hara, H. (2016) Abundance of sulfur-degrading bacteria in a benthic bacterial community of shallow sea sediment in the off-Terengganu coast of the South China Sea. MicrobiologyOpen, 5 (6). pp. 967-978. ISSN 2045-8827

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Abstract

This study for the first time provides insight into the bacterial community in the benthic region of the Off-Terengganu Coastline, which is considered to be anthropogenically polluted due to heavy fishing vessel commotion. Subsurface bacteria were randomly collected from two locations at different depths and were examined using the 16S rDNA V3-V4 marker gene on the Illumina™ Miseq platform. In addition, the physiochemical parameters of the sediment were also measured. Surprisingly, the results show a high diversity of sulfur-oxidizing bacteria in the surveyed area, where Sulfurovum sp. was identified to predominate the overall bacterial community. The physiochemical parameters reveal insufficient evidence of hydrothermal vents in the surveyed area. However, there are traces of hydrocarbon pollutants such as gasoline, diesel, and mineral oil in this area. It is assumed that sediment accumulation in the lee of breakwater plays an important role in trapping the runoff from the nearby harbor, which includes oil spills. Based on the common knowledge, Sulvurofum sp. is a native bacterium that exists in deep hydrothermal vents and volcanic territories. Although the reason for the abundance of Sulfurovum sp. in the surveyed area is still unclear, there is a possibility that metabolic adaptation plays an important role in regulating hydrocarbon pollutants for survival. The work presented in this paper therefore has profound implications for future studies on Sulfurovum sp. versatility. However, future research is needed to strengthen the findings of this study and to provide a better evidence regarding the metabolic response of this bacterium toward hydrocarbon pollutants.

Item Type:Article
Uncontrolled Keywords:diesel fuel, DNA 16S, gasoline, hexane, hydrocarbon, mineral oil, organic carbon, petroleum, sea water, bacterial DNA, RNA 16S, sulfur, water pollutant, Article, bacterium, bacterium identification, chemical analysis, China, concentration (parameters), controlled study, Epsilonproteobacteria, gene function, gene identification, geographic distribution, marker gene, microbial community, molecular phylogeny, nonhuman, physical chemistry, population abundance, priority journal, sediment, species diversity, sulfur degrading bacteria, Sulfurovum, total organic carbon, classification, DNA sequence, genetics, hydrothermal vent, isolation and purification, metabolism, microbiology, nucleotide sequence, oil spill, water pollutant, Base Sequence, China, DNA, Bacterial, Epsilonproteobacteria, Geologic Sediments, Hydrothermal Vents, Petroleum Pollution, RNA, Ribosomal, 16S, Seawater, Sequence Analysis, DNA, Sulfur, Water Microbiology, Water Pollutants, Chemical
Subjects:T Technology > TA Engineering (General). Civil engineering (General)
Divisions:Malaysia-Japan International Institute of Technology
ID Code:71539
Deposited By: Widya Wahid
Deposited On:16 Nov 2017 08:43
Last Modified:16 Nov 2017 08:43

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