Tap, F. M. and Ishak, A. and Hussam, R. and Ahmad Khairudin, Nurul Bahiyah (2012) Molecular dynamics folding simulation of ß-hairpins from protein G. In: 2012 International Conference on Biomedical Engineering, ICoBE 2012. IEEE, New York, USA, pp. 123-128. ISBN 978-145771989-9
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Official URL: http://dx.doi.org/10.1109/ICoBE.2012.6178968
Abstract
The structure and trajectories of the 41-56 -hairpins from the protein G (PDB ID: 1GB1) has been studied using Molecular Dynamics (MD) simulation. The purpose of this project is to investigate the pathway of the folding process. The simulation was run at 325 K for 50ns. The linear chain of the protein sequence became completely folded to -hairpin structure at nearly 40ns. There were 18 interactions of hydrogen Bonds involved in the model. The model was aligned to the Nuclear Magnetic Resonance (NMR) structure with the RMSD value of 3.05 for overall structure and 1.04 for the turning part. The values of RMSD showed the comparison of the model and the native structure.
| Item Type: | Book Section |
|---|---|
| Additional Information: | Indexed by Scopus |
| Uncontrolled Keywords: | molecular dynamics, protein folding, protein G |
| Subjects: | Q Science > Q Science (General) |
| Divisions: | Malaysia-Japan International Institute of Technology |
| ID Code: | 35721 |
| Deposited By: | Fazli Masari |
| Deposited On: | 29 Oct 2013 01:10 |
| Last Modified: | 04 Feb 2017 06:17 |
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