Thevarajoo, S. and Selvaratnam, C. and Goh, K. M. and Hong, K. W. and Chan, X. Y. and Chan, K. G. and Chong, C. S. (2016) Vitellibacter aquimaris sp. nov., a marine bacterium isolated from seawater. International Journal of Systematic and Evolutionary Microbiology, 66 (9). pp. 3662-3668. ISSN 1466-5026
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Abstract
A Gram-staining-negative, aerobic, yellow–orange-pigmented, rod-shaped bacterium designated D-24T was isolated from seawater from sandy shoreline in Johor, Malaysia. The 16S rRNA gene sequence analysis revealed that strain D-24T is affiliated with the genus Vitellibacter. It shared more than 96% sequence similarity with the types of some of the validly published species of the genus: Vitellibacter vladivostokensis KMM 3516T (99.5 %), Vitellibacter soesokkakensis RSSK- 12T (97.3 %), Vitellibacter echinoideorum CC-CZW007T (96.9 %), Vitellibacter nionensis VBW088T (96.7 %) and Vitellibacter aestuarii JCM 15496T (96.3 %). DNA–DNA hybridization and genome-based analysis of average nucleotide identity (ANI) of strain D-24T versus V. vladivostokensis KMM 3516T exhibited values of 35.9±0.14% and 89.26 %, respectively. Strain D-24T showed an even lower ANI value of 80.88% with V. soesokkakensis RSSK-12T. The major menaquinone of strain D-24T was MK-6, and the predominant fatty acids were iso-C15: 0 and iso-C17: 0 3-OH. Strain D-24T contained major amounts of phosphatidylethanolamine, two lipids and two aminolipids, and a phosphoglycolipid that was different to that of other species of the genus Vitellibacter. The genomic DNA G+C content was 40.6 mol%. On the basis of phenotypic properties, DNA–DNA relatedness, ANI value and chemotaxonomic analyses, strain D-24T represents a novel species of the genus Vitellibacter, for which the name Vitellibacter aquimaris sp. nov. is proposed. The type strain is D-24T (=KCTC 42708T=DSM 101732T).
| Item Type: | Article |
|---|---|
| Uncontrolled Keywords: | aminolipid, bacterial DNA, bacterial RNA, genomic DNA, lipid, menaquinone, nucleotide, phosphatidylethanolamine, phosphoglycolipid, RNA 16S, sea water, unclassified drug, farnoquinone, fatty acid, glycolipid, Article, bacterial gene, bacterial genome, bacterial strain, bacterium isolation, chemotaxonomy, controlled study, DNA base composition, DNA DNA hybridization, fatty acid analysis, Flavobacteriaceae, genome analysis, Gram negative bacterium, Gram staining, lipid composition, Malaysia, marine bacterium, new genus, nonhuman, nucleotide sequence, phenotype, priority journal, RNA sequence, sequence analysis, species comparison, Vitellibacter aestuarii, Vitellibacter aquimaris, Vitellibacter echinoideorum, Vitellibacter nionensis, Vitellibacter soesokkakensis, Vitellibacter vladivostokensis, analogs and derivatives, bacterium identification, chemistry, classification, DNA sequence, Flavobacteriaceae, genetics, isolation and purification, microbiology, nucleic acid hybridization, phylogeny, pigmentation, Bacterial Typing Techniques, Base Composition, DNA, Bacterial, Fatty Acids, Flavobacteriaceae, Glycolipids, Malaysia, Nucleic Acid Hybridization, Phosphatidylethanolamines, Phylogeny, Pigmentation, RNA, Ribosomal, 16S, Seawater, Sequence Analysis, DNA, Vitamin K 2 |
| Subjects: | Q Science > Q Science (General) |
| Divisions: | Biosciences and Medical Engineering |
| ID Code: | 72171 |
| Deposited By: | Fazli Masari |
| Deposited On: | 16 Nov 2017 08:21 |
| Last Modified: | 16 Nov 2017 08:21 |
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