Universiti Teknologi Malaysia Institutional Repository

Recognition of simple splicing systems using SH-Automaton

Fong, W. H. and Sarmin, N. H. and Ibrahim, Z. (2008) Recognition of simple splicing systems using SH-Automaton. In: Proceeding of Regional Annual Fundamental Science Seminar 2008, 27-29 May 2008, Universiti Teknologi Malaysia, Skudai, Johor. (Unpublished)

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Abstract

Splicing language is the language which results from a splicing system. Splicing system was first introduced by Tom Head in 1987 as the mathematical model of systems of restriction enzymes acting on initial DNA molecules. Splicing languages are closely related to automata theory. Simple splicing systems can be recognized by SH-automata diagrams due to the regularity of splicing languages. SH-automaton defines exactly one language which is the language generated by the simple splicing system. In this paper, the concept of firm and maximal firm subwords are introduced. Some examples are then given to illustrate the maximal firm subwords of a word in a simple splicing system. Taking the SH-automata concept, which is a short compact way of encoding normal non-deterministic automata in the special case of SH systems, the maximal firm subwords of the initial words of an SH systems serve as the labels for the associated SH-automaton. Some examples which will show the maximal firm subwords of the words in the initial set I, the regular expression for the language generated by the given splicing system and the simplest non-deterministic automaton that recognizes the corresponding splicing system are also given.

Item Type:Conference or Workshop Item (Paper)
Uncontrolled Keywords:splicing system, splicing language, SH-automaton, maximal firm subwords, regular expression
Subjects:Q Science > QA Mathematics > QA75 Electronic computers. Computer science
Divisions:Science
ID Code:6073
Deposited By: Dr Siew Ling Lee
Deposited On:08 Oct 2008 04:16
Last Modified:19 May 2011 04:29

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