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β-sheet containment by flanking prolines: Molecular Dynamic Simulations of the inhibition of β-sheet elongation by proline residues in human prion protein.

Shamsir, Mohd Shahir and Dalby, Andrew (2007) β-sheet containment by flanking prolines: Molecular Dynamic Simulations of the inhibition of β-sheet elongation by proline residues in human prion protein. Biophysical Journal, 92 . pp. 2080-2089.

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Official URL: http://www.biophysj.org/cgi/content/abstract/92/6/...

Abstract

Previous molecular dynamic simulations have reported elongation of the existing β-sheet in prion proteins. Detailed examination has shown that these elongations do not extend beyond the proline residues flanking these β-sheets. In addition, proline has also been suggested to possess a possible structural role in preserving protein interaction sites by preventing invasion of neighbouring secondary structures. In this paper, we have studied the possible structural role of the flanling proline residues by simulating mutant structures with alternate substitution of the proline residues with valine. Simulations showed a directional inhibition of elongation with the elongation progressing in the direction of valine including evident inhibition of elongation by existing proline residues. This suggests that the flanking proline residues in prion proteins may have a containment role and would confine the β-sheet within a specific length.

Item Type:Article
Uncontrolled Keywords:Molecular dynamics simulation, prion, proline, beta sheet
Subjects:Q Science > Q Science (General)
Q Science > QH Natural history > QH301 Biology
Divisions:Science
ID Code:462
Deposited By: Mr Mohd Shahir Shamsir
Deposited On:16 Feb 2007 03:30
Last Modified:01 Jun 2010 02:44

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